Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8074

Experiment: YNB Oleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16441 and 16442 are separated by 409 nucleotides16442 and 16443 are separated by 409 nucleotides mRNA_8073: 16441 - Hypothetical Protein, at 361,679 to 362,906 16441 mRNA_8074: 16442 - Hypothetical Protein, at 363,316 to 363,918 16442 mRNA_8075: 16443 - K13525 VCP, CDC48 transitional endoplasmic reticulum ATPase, at 364,328 to 367,178 16443

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
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362,394 + 16441 mRNA_8073 0.58 -0.1
362,396 - 16441 mRNA_8073 0.58 +0.6
362,426 + 16441 mRNA_8073 0.61 +0.4
362,537 - 16441 mRNA_8073 0.70 -0.1
362,839 - -0.4
362,964 - -0.4
363,551 - 16442 mRNA_8074 0.39 -0.3
363,565 - 16442 mRNA_8074 0.41 -0.1
363,569 + 16442 mRNA_8074 0.42 -1.5
363,691 - 16442 mRNA_8074 0.62 +1.5
363,843 + 16442 mRNA_8074 0.87 -0.9
363,961 + -1.4
363,980 - +0.4
363,987 + -0.2
364,120 - -0.2
364,140 - -0.1
364,165 + +1.0
364,281 - -0.6
364,298 - -0.8

Or see this region's nucleotide sequence