Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8163

Experiment: YNB Oleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16530 and 16531 are separated by 131 nucleotides16531 and 16532 are separated by 215 nucleotides mRNA_8162: 16530 - K01288 KEX1 carboxypeptidase D, at 560,914 to 563,494 16530 mRNA_8163: 16531 - HMMPfam-Domain of unknown function (DUF4505)-PF14956, at 563,626 to 564,400 16531 mRNA_8164: 16532 - Hypothetical Protein, at 564,616 to 567,626 16532

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
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562,632 + 16530 mRNA_8162 0.67 +0.2
562,651 + 16530 mRNA_8162 0.67 +0.3
563,233 + 16530 mRNA_8162 0.90 -2.3
563,375 + +0.1
563,389 + -0.0
563,389 + -0.3
563,515 - -0.8
563,524 + -2.2
563,538 + +0.0
563,545 + +0.7
563,547 + +0.6
563,556 + +0.2
563,979 + 16531 mRNA_8163 0.46 +0.3
564,106 - 16531 mRNA_8163 0.62 +0.5
564,110 + 16531 mRNA_8163 0.62 +0.2
564,212 - 16531 mRNA_8163 0.76 +0.4
564,222 - 16531 mRNA_8163 0.77 -0.1
564,234 - 16531 mRNA_8163 0.78 -0.7
564,410 + +0.3
564,431 - -0.4
564,435 + +0.1
564,576 - -0.0
564,586 + -1.2
564,688 - +1.4
564,858 + +0.9
564,972 - 16532 mRNA_8164 0.12 -2.2
565,035 + 16532 mRNA_8164 0.14 +0.9
565,147 + 16532 mRNA_8164 0.18 +1.2
565,150 - 16532 mRNA_8164 0.18 -0.1
565,175 + 16532 mRNA_8164 0.19 +1.2

Or see this region's nucleotide sequence