Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8178

Experiment: YNB Oleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16545 and 16546 are separated by 128 nucleotides mRNA_8177: 16545 - Hypothetical Protein, at 605,044 to 605,937 16545 mRNA_8178: 16546 - Hypothetical Protein, at 606,066 to 607,018 16546

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
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605,082 + +1.2
605,147 - 16545 mRNA_8177 0.12 -0.9
605,443 + 16545 mRNA_8177 0.45 +0.5
605,560 - 16545 mRNA_8177 0.58 -1.5
605,870 - -2.3
606,064 - -1.2
606,283 - 16546 mRNA_8178 0.23 -1.0
607,048 + -1.2
607,051 - +0.6
607,068 + +0.5
607,351 - +0.2
607,491 - -0.8
607,498 + -0.5
607,654 + +0.9
607,682 + -0.7
607,692 + -2.8
607,718 + -1.5
607,723 + -0.9
607,725 + +0.7
607,726 - +0.7
607,728 - -0.5
607,731 + -0.2
607,766 - +0.1
607,770 - +0.6
607,771 + -0.2
607,773 + +0.6
607,773 + -0.8
607,805 + -0.2
607,814 + +0.6
607,815 + -0.7
607,829 + -1.0
607,833 - +0.7
607,844 - +2.8
607,848 + -1.8
607,851 - -0.1
607,869 - -0.1
607,879 - +0.2
607,911 - -0.2
607,943 + -0.2
607,947 - -1.4
607,947 + +0.2
607,956 - +0.3
607,957 + -0.5
607,968 - -1.9
607,969 - -0.5
607,976 + -0.4
607,985 - -1.1
608,012 - +0.3

Or see this region's nucleotide sequence