Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8205

Experiment: YNB Oleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16572 and 16573 are separated by 238 nucleotides16573 and 16574 are separated by 491 nucleotides mRNA_8204: 16572 - KOG3289 Uncharacterized conserved protein encoded by sequence overlapping the COX4 gene, at 666,079 to 666,849 16572 mRNA_8205: 16573 - K11339 MORF4L1, MRG15, EAF3 mortality factor 4-like protein 1, at 667,088 to 668,435 16573 mRNA_8206: 16574 - Hypothetical Protein, at 668,927 to 671,971 16574

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
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666,309 - 16572 mRNA_8204 0.30 -0.5
666,314 - 16572 mRNA_8204 0.30 -0.4
666,901 - +0.1
667,055 - -0.0
667,909 + 16573 mRNA_8205 0.61 +1.2
668,207 + 16573 mRNA_8205 0.83 +0.1
668,511 + -0.6
668,655 + -1.1
668,663 + +0.6
668,672 - +0.2
668,673 - +0.8
668,678 - +0.3
668,684 - +0.3
668,805 - +0.1
669,249 + 16574 mRNA_8206 0.11 +0.2
669,258 - 16574 mRNA_8206 0.11 +0.1

Or see this region's nucleotide sequence