Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8209

Experiment: YNB Oleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16576 and 16577 are separated by 245 nucleotides16577 and 16578 are separated by 196 nucleotides mRNA_8208: 16576 - BLAST putative Rho guanyl-nucleotide exchange factor [Rhodo..., at 672,999 to 674,159 16576 mRNA_8209: 16577 - K17618 UBLCP1 ubiquitin-like domain-containing CTD phosphatase 1, at 674,405 to 676,070 16577 mRNA_8210: 16578 - BLAST WetA [Penicillium camemberti], at 676,267 to 678,027 16578

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
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673,650 - 16576 mRNA_8208 0.56 +1.1
673,796 + 16576 mRNA_8208 0.69 -0.9
674,701 + 16577 mRNA_8209 0.18 -0.1
674,843 - 16577 mRNA_8209 0.26 +0.3
675,373 - 16577 mRNA_8209 0.58 +0.4
675,672 - 16577 mRNA_8209 0.76 -0.6
675,689 + 16577 mRNA_8209 0.77 +0.4
675,805 - 16577 mRNA_8209 0.84 -0.9
675,818 - 16577 mRNA_8209 0.85 +0.2
675,822 + 16577 mRNA_8209 0.85 -0.5
675,966 - +0.7
675,975 - -0.0
676,113 - -1.0
676,117 - +1.2
676,121 + -1.1
676,125 - -0.5
676,132 + -0.5
676,134 - +0.2
676,157 + -0.3
676,157 - -0.1
676,458 + 16578 mRNA_8210 0.11 +0.4
676,878 - 16578 mRNA_8210 0.35 +0.3

Or see this region's nucleotide sequence