Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8240

Experiment: YNB Oleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16607 and 16608 are separated by 300 nucleotides16608 and 16609 are separated by 179 nucleotides mRNA_8239: 16607 - K00101 E1.1.2.3, lldD L-lactate dehydrogenase (cytochrome), at 738,207 to 740,675 16607 mRNA_8240: 16608 - K14350 AADACL2 arylacetamide deacetylase-like 2, at 740,976 to 744,696 16608 mRNA_8241: 16609 - Hypothetical Protein, at 744,876 to 746,640 16609

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
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740,086 - 16607 mRNA_8239 0.76 -1.2
740,230 + 16607 mRNA_8239 0.82 +0.8
740,522 - +1.4
740,662 + -0.2
740,685 + -0.7
740,809 - -0.7
740,811 - +0.5
740,819 - -0.1
740,834 - -0.4
740,946 + +0.2
740,984 - +1.3
741,123 + -0.8
741,435 - 16608 mRNA_8240 0.12 -1.6
741,715 + 16608 mRNA_8240 0.20 +0.3
742,263 - 16608 mRNA_8240 0.35 -0.3
742,423 - 16608 mRNA_8240 0.39 -0.1
742,551 - 16608 mRNA_8240 0.42 +1.4
742,700 + 16608 mRNA_8240 0.46 +0.2
742,708 - 16608 mRNA_8240 0.47 +1.1
743,125 + 16608 mRNA_8240 0.58 +0.7
743,238 - 16608 mRNA_8240 0.61 +0.4
743,406 - 16608 mRNA_8240 0.65 -0.1
743,414 + 16608 mRNA_8240 0.66 +0.2
743,751 - 16608 mRNA_8240 0.75 +1.8
744,394 - -0.6
745,138 + 16609 mRNA_8241 0.15 +0.3
745,459 - 16609 mRNA_8241 0.33 -2.1
745,673 + 16609 mRNA_8241 0.45 -0.3

Or see this region's nucleotide sequence