Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8250

Experiment: YNB Oleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16617 and 16618 are separated by 127 nucleotides16618 and 16619 are separated by 652 nucleotides mRNA_8249: 16617 - SUPERFAMILY--SSF52047, at 762,768 to 764,331 16617 mRNA_8250: 16618 - K17069 MET17 O-acetylhomoserine/O-acetylserine sulfhydrylase, at 764,459 to 766,227 16618 mRNA_8251: 16619 - HMMPfam-SacI homology domain-PF02383,ProSiteProfiles-Sac phosphatase domain profile.-PS50275, at 766,880 to 770,400 16619

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
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763,758 - 16617 mRNA_8249 0.63 +0.6
763,774 + 16617 mRNA_8249 0.64 -0.2
764,149 - 16617 mRNA_8249 0.88 -1.5
764,311 - -0.7
764,316 + -0.3
764,324 + -0.6
764,475 - +0.6
764,605 - -0.1
764,708 - 16618 mRNA_8250 0.14 -0.2
764,711 - 16618 mRNA_8250 0.14 +0.4
764,880 - 16618 mRNA_8250 0.24 -0.2
764,894 + 16618 mRNA_8250 0.25 +0.1
764,911 + 16618 mRNA_8250 0.26 -0.6
764,915 - 16618 mRNA_8250 0.26 +0.4
765,338 + 16618 mRNA_8250 0.50 +0.0
765,500 + 16618 mRNA_8250 0.59 -0.2
765,761 - 16618 mRNA_8250 0.74 +0.4
765,908 + 16618 mRNA_8250 0.82 +0.3
766,023 + 16618 mRNA_8250 0.88 -0.3
766,059 + -0.2
766,071 - +0.3
766,201 - +0.1
766,214 + -0.6
766,284 - +1.2
766,331 - -0.6
766,340 - +0.3
766,358 - -0.3
766,505 + -0.4
766,651 - +0.6
766,655 + +0.0
766,667 + +0.1
766,958 - -0.1

Or see this region's nucleotide sequence