Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8283

Experiment: YNB Oleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16651 and 16652 are separated by 408 nucleotides mRNA_8283: 16651 - HMMPfam-Poly(ADP-ribose) polymerase and DNA-Ligase Zn-finger region-PF00645,PRINTS-Histone H5 signature-PR00624,ProSiteProfiles-Poly(ADP-ribose) polymerase zinc finger domain profile.-PS50064,SUPERFAMILY--SSF57716, at 837,568 to 839,019 16651 mRNA_8284: 16652 - K07023 K07023 putative hydrolases of HD superfamily, at 839,428 to 840,649 16652

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
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836,649 - -0.3
836,794 - -1.1
836,795 + -0.4
836,799 - +0.3
837,222 + -0.3
837,234 + -0.2
837,247 - -0.5
837,390 + +1.8
837,391 + -0.5
837,400 + -0.5
837,529 - -0.9
837,555 + -1.7
837,660 - +0.1
837,665 - +0.3
837,888 + 16651 mRNA_8283 0.22 +0.5
837,987 + 16651 mRNA_8283 0.29 -0.4
837,998 - 16651 mRNA_8283 0.30 -0.3
838,277 - 16651 mRNA_8283 0.49 -0.8
838,278 + 16651 mRNA_8283 0.49 -1.1
838,633 - 16651 mRNA_8283 0.73 +0.7
838,689 - 16651 mRNA_8283 0.77 -0.8
838,704 - 16651 mRNA_8283 0.78 +1.0
838,990 + -0.4
839,000 + -0.0
839,147 + +0.4
839,167 + +0.4
839,183 - +1.7
839,317 + -0.7
839,434 - +0.0
839,447 - +0.3
839,454 - -0.4
839,456 - -1.0
839,543 - +1.5
839,584 - 16652 mRNA_8284 0.13 -0.3
839,725 + 16652 mRNA_8284 0.24 +0.5
839,921 - 16652 mRNA_8284 0.40 -0.0

Or see this region's nucleotide sequence