Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8317

Experiment: YNB Oleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16684 and 16685 are separated by 604 nucleotides16685 and 16686 are separated by 315 nucleotides mRNA_8316: 16684 - KOG2923 Uncharacterized conserved protein, at 922,409 to 922,756 16684 mRNA_8317: 16685 - Hypothetical Protein, at 923,361 to 925,022 16685 mRNA_8318: 16686 - ProSiteProfiles-PH domain profile.-PS50003,SMART-Pleckstrin homology domain.-SM00233,SUPERFAMILY--SSF50729,SUPERFAMILY--SSF54236, at 925,338 to 930,210 16686

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
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922,505 + 16684 mRNA_8316 0.28 -2.3
922,683 + 16684 mRNA_8316 0.79 -1.1
923,539 - 16685 mRNA_8317 0.11 +0.2
923,622 + 16685 mRNA_8317 0.16 -0.0
923,682 - 16685 mRNA_8317 0.19 -2.6
924,969 + +0.2
925,265 - +0.1
925,297 - -0.2
925,883 - 16686 mRNA_8318 0.11 -0.1
925,975 + 16686 mRNA_8318 0.13 -0.1

Or see this region's nucleotide sequence