Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8321

Experiment: YNB Oleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16688 and 16689 are separated by 437 nucleotides16689 and 16690 are separated by 304 nucleotides mRNA_8320: 16688 - KOG1516 Carboxylesterase and related proteins, at 932,873 to 935,850 16688 mRNA_8321: 16689 - Hypothetical Protein, at 936,288 to 937,256 16689 mRNA_8322: 16690 - Hypothetical Protein, at 937,561 to 938,825 16690

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
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935,413 + 16688 mRNA_8320 0.85 -1.5
935,529 + 16688 mRNA_8320 0.89 -0.4
936,076 - +0.8
936,082 + +0.6
936,251 + +0.3
936,261 + +0.3
936,386 - 16689 mRNA_8321 0.10 +1.0
936,416 - 16689 mRNA_8321 0.13 -0.8
936,419 + 16689 mRNA_8321 0.14 +0.0
936,556 + 16689 mRNA_8321 0.28 -3.4
936,669 + 16689 mRNA_8321 0.39 -0.5
936,685 + 16689 mRNA_8321 0.41 -2.0
937,136 - 16689 mRNA_8321 0.88 -0.1
937,279 - +1.1
937,409 + -0.5
937,577 + -0.3
937,586 + -0.3
938,142 - 16690 mRNA_8322 0.46 +0.7

Or see this region's nucleotide sequence