Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8360

Experiment: YNB Oleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16727 and 16728 are separated by 44 nucleotides16728 and 16729 are separated by 284 nucleotides mRNA_8359: 16727 - Hypothetical Protein, at 1,029,156 to 1,031,168 16727 mRNA_8360: 16728 - K02739 PSMB7 20S proteasome subunit beta 2, at 1,031,213 to 1,032,623 16728 mRNA_8361: 16729 - K06640 ATR serine/threonine-protein kinase ATR, at 1,032,908 to 1,038,730 16729

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
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1,030,260 + 16727 mRNA_8359 0.55 -0.6
1,030,577 - 16727 mRNA_8359 0.71 +1.1
1,030,646 + 16727 mRNA_8359 0.74 +0.8
1,030,776 - 16727 mRNA_8359 0.80 -0.9
1,030,887 + 16727 mRNA_8359 0.86 -0.5
1,031,067 - -0.4
1,031,069 + +0.9
1,031,086 + +1.5
1,031,199 - +0.6
1,031,199 - -0.2
1,031,221 - +0.6
1,031,340 - -0.8
1,031,341 + -3.0
1,031,354 - 16728 mRNA_8360 0.10 +0.7
1,031,363 + 16728 mRNA_8360 0.11 +1.3
1,031,368 + 16728 mRNA_8360 0.11 -0.3
1,031,372 - 16728 mRNA_8360 0.11 +0.6
1,031,378 + 16728 mRNA_8360 0.12 -0.0
1,031,395 - 16728 mRNA_8360 0.13 +0.4
1,032,414 - 16728 mRNA_8360 0.85 +1.3
1,032,446 + 16728 mRNA_8360 0.87 +0.6
1,032,574 + +0.1
1,032,677 - -0.1

Or see this region's nucleotide sequence