Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8393

Experiment: YNB Oleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16760 and 16761 are separated by 66 nucleotides16761 and 16762 are separated by 513 nucleotides mRNA_8392: 16760 - ProSiteProfiles-JmjC domain profile.-PS51184,SMART-A domain family that is part of the cupin metalloenzyme superfamily.-SM00558,SUPERFAMILY--SSF51197, at 1,104,221 to 1,108,536 16760 mRNA_8393: 16761 - K12385 NPC1 Niemann-Pick C1 protein, at 1,108,603 to 1,114,039 16761 mRNA_8394: 16762 - KOG3680 Uncharacterized conserved protein, at 1,114,553 to 1,119,513 16762

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
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1,107,846 + 16760 mRNA_8392 0.84 +0.3
1,107,953 + 16760 mRNA_8392 0.86 -2.1
1,108,266 - +0.3
1,108,281 - -0.7
1,108,324 - -0.2
1,108,584 + -0.3
1,108,596 - -1.3
1,108,607 - +0.9
1,108,735 + +1.0
1,108,805 - +0.4
1,108,824 - +0.3
1,108,861 + -0.3
1,108,899 + +0.2
1,108,963 + -1.7
1,109,035 - -0.1
1,109,106 + -1.6
1,109,148 - 16761 mRNA_8393 0.10 +0.5
1,109,169 + 16761 mRNA_8393 0.10 +0.8
1,109,625 - 16761 mRNA_8393 0.19 +1.1
1,109,663 + 16761 mRNA_8393 0.19 +0.2
1,109,914 + 16761 mRNA_8393 0.24 -2.7
1,109,966 + 16761 mRNA_8393 0.25 -0.9
1,110,014 - 16761 mRNA_8393 0.26 +0.3
1,110,067 - 16761 mRNA_8393 0.27 +0.4
1,110,185 - 16761 mRNA_8393 0.29 -0.7
1,110,366 - 16761 mRNA_8393 0.32 -1.3
1,110,654 + 16761 mRNA_8393 0.38 +0.2
1,110,655 - 16761 mRNA_8393 0.38 -0.3
1,110,704 + 16761 mRNA_8393 0.39 +0.9
1,110,812 + 16761 mRNA_8393 0.41 +0.3
1,111,240 - 16761 mRNA_8393 0.49 +0.3
1,111,255 - 16761 mRNA_8393 0.49 +0.3
1,111,259 + 16761 mRNA_8393 0.49 -0.9
1,111,719 - 16761 mRNA_8393 0.57 -0.9
1,111,745 + 16761 mRNA_8393 0.58 -0.2
1,111,750 - 16761 mRNA_8393 0.58 +0.4
1,111,835 + 16761 mRNA_8393 0.59 +1.1
1,112,028 + 16761 mRNA_8393 0.63 +0.6
1,112,234 + 16761 mRNA_8393 0.67 +0.2
1,112,316 - 16761 mRNA_8393 0.68 +0.0
1,112,500 + 16761 mRNA_8393 0.72 +0.6
1,112,639 - 16761 mRNA_8393 0.74 +0.6
1,112,749 + 16761 mRNA_8393 0.76 +0.3
1,112,753 - 16761 mRNA_8393 0.76 -0.2
1,112,754 + 16761 mRNA_8393 0.76 +0.4
1,112,867 - 16761 mRNA_8393 0.78 +0.9
1,113,358 + 16761 mRNA_8393 0.87 -0.3
1,113,786 - +0.7
1,113,786 - +0.2
1,113,786 - +0.7
1,113,787 - +1.9
1,113,791 + +0.0
1,113,942 - -0.4
1,114,060 - +1.7
1,114,108 - -0.7
1,114,245 + +0.3
1,114,259 - -0.5
1,114,272 - +0.7
1,114,533 + -0.1
1,114,697 + -1.2
1,114,699 + +0.7
1,114,701 + +0.7
1,114,703 - +2.5
1,114,996 + +1.1

Or see this region's nucleotide sequence