Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_15

Experiment: YNB Oleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8383 and 8384 are separated by 242 nucleotides mRNA_15: 8383 - K02321 POLA2 DNA polymerase alpha subunit B, at 39,313 to 41,292 8383 mRNA_16: 8384 - K03407 cheA two-component system, chemotaxis family, sensor kinase CheA, at 41,535 to 45,882 8384

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
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38,429 - +0.6
38,433 - -0.3
38,535 + -0.9
38,596 + +0.4
38,601 - -0.7
38,607 - -1.0
38,620 - +1.0
41,523 - +0.4
41,618 - -0.2
41,620 + +0.2
41,697 - +0.5
41,830 + +0.0
41,854 - +1.8
41,863 + +1.0
42,189 + 8384 mRNA_16 0.15 +0.9

Or see this region's nucleotide sequence