Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_51

Experiment: YNB Oleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8418 and 8419 are separated by 231 nucleotides8419 and 8420 are separated by 53 nucleotides8420 and 8421 are separated by 210 nucleotides mRNA_50: 8418 - KOG1611 Predicted short chain-type dehydrogenase, at 118,975 to 119,840 8418 mRNA_51: 8419 - K10392 KIF1 kinesin family member 1, at 120,072 to 126,065 8419 mRNA_52: 8420 - Hypothetical Protein, at 126,119 to 126,700 8420 mRNA_53: 8421 - K03014 RPB6, POLR2F DNA-directed RNA polymerases I, II, and III subunit RPABC2, at 126,911 to 127,593 8421

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
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119,302 + 8418 mRNA_50 0.38 +0.0
119,387 - 8418 mRNA_50 0.48 +0.2
119,413 + 8418 mRNA_50 0.51 +0.7
119,416 - 8418 mRNA_50 0.51 -0.4
119,416 - 8418 mRNA_50 0.51 -0.1
119,417 - 8418 mRNA_50 0.51 +0.7
119,422 + 8418 mRNA_50 0.52 +0.6
119,422 + 8418 mRNA_50 0.52 -0.5
119,600 + 8418 mRNA_50 0.72 +0.1
119,707 - 8418 mRNA_50 0.85 -1.2
119,957 + +0.8
120,035 + +0.4
120,142 - -0.3
120,383 + +1.2
120,401 - +0.3
120,434 - -1.4
120,549 + -1.1
120,695 - 8419 mRNA_51 0.10 -0.8
120,744 + 8419 mRNA_51 0.11 -1.0
121,182 - 8419 mRNA_51 0.19 +0.5
121,438 - 8419 mRNA_51 0.23 -0.3
121,447 - 8419 mRNA_51 0.23 -3.2
121,579 - 8419 mRNA_51 0.25 -1.7
121,616 + 8419 mRNA_51 0.26 +0.4
121,711 + 8419 mRNA_51 0.27 -1.1
122,154 - 8419 mRNA_51 0.35 -1.2
122,332 - 8419 mRNA_51 0.38 -2.0
122,347 + 8419 mRNA_51 0.38 +0.4
122,637 + 8419 mRNA_51 0.43 +0.3
122,946 + 8419 mRNA_51 0.48 -1.9
122,958 - 8419 mRNA_51 0.48 -1.2
123,078 - 8419 mRNA_51 0.50 -0.5
123,092 + 8419 mRNA_51 0.50 +0.1
123,216 + 8419 mRNA_51 0.52 -0.8
123,233 - 8419 mRNA_51 0.53 -0.8
123,836 - 8419 mRNA_51 0.63 -1.4
124,151 - 8419 mRNA_51 0.68 -0.4
124,160 - 8419 mRNA_51 0.68 -0.6
124,411 - 8419 mRNA_51 0.72 +1.5
124,593 - 8419 mRNA_51 0.75 +0.7
124,664 + 8419 mRNA_51 0.77 +0.3
124,766 + 8419 mRNA_51 0.78 +0.2
124,808 - 8419 mRNA_51 0.79 +1.0
124,975 + 8419 mRNA_51 0.82 -0.1
125,015 - 8419 mRNA_51 0.82 -0.4
125,052 - 8419 mRNA_51 0.83 -1.2
125,118 + 8419 mRNA_51 0.84 -1.4
125,121 - 8419 mRNA_51 0.84 -1.4
125,156 - 8419 mRNA_51 0.85 +0.3
125,162 + 8419 mRNA_51 0.85 -1.3
125,328 + 8419 mRNA_51 0.88 -1.1
125,450 - 8419 mRNA_51 0.90 +0.9
125,563 - -0.5
125,964 + -0.2
126,009 - +0.2
126,011 + -1.0
126,151 + +1.1
126,158 + +0.3
126,297 + 8420 mRNA_52 0.31 -0.3
126,298 - 8420 mRNA_52 0.31 -0.0
126,314 + 8420 mRNA_52 0.34 +0.2
126,324 + 8420 mRNA_52 0.35 -1.1
126,324 + 8420 mRNA_52 0.35 -0.9
126,425 - 8420 mRNA_52 0.53 +0.2
126,428 - 8420 mRNA_52 0.53 +0.8
126,430 - 8420 mRNA_52 0.53 +0.2
126,437 - 8420 mRNA_52 0.55 -1.8
126,448 + 8420 mRNA_52 0.57 -1.5
126,452 + 8420 mRNA_52 0.57 +0.8

Or see this region's nucleotide sequence