Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_59

Experiment: YNB Oleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8426 and 8427 are separated by 260 nucleotides8427 and 8428 are separated by 306 nucleotides mRNA_58: 8426 - HMMPfam-Arrestin (or S-antigen), N-terminal domain-PF00339,SUPERFAMILY--SSF81296, at 138,676 to 140,962 8426 mRNA_59: 8427 - Hypothetical Protein, at 141,223 to 142,116 8427 mRNA_60: 8428 - Hypothetical Protein, at 142,423 to 142,761 8428

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
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140,276 - 8426 mRNA_58 0.70 +0.8
140,436 - 8426 mRNA_58 0.77 +0.5
140,440 + 8426 mRNA_58 0.77 -0.4
140,545 - 8426 mRNA_58 0.82 -0.3
140,593 - 8426 mRNA_58 0.84 -0.2
140,696 - 8426 mRNA_58 0.88 -0.0
140,902 + -0.2
141,132 - +0.5
141,177 - -0.2
141,196 + -0.1
141,449 - 8427 mRNA_59 0.25 -0.2
141,460 - 8427 mRNA_59 0.27 -0.1
141,509 - 8427 mRNA_59 0.32 +0.1
141,518 - 8427 mRNA_59 0.33 -0.4
141,747 + 8427 mRNA_59 0.59 -1.8
141,774 + 8427 mRNA_59 0.62 -0.2
141,788 - 8427 mRNA_59 0.63 -0.5
141,818 - 8427 mRNA_59 0.67 +0.6
141,824 - 8427 mRNA_59 0.67 -0.1
141,907 - 8427 mRNA_59 0.77 +0.0
142,085 + -0.6
142,688 - 8428 mRNA_60 0.78 +0.2
142,706 + 8428 mRNA_60 0.83 -0.2
143,007 + +1.1

Or see this region's nucleotide sequence