Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_72

Experiment: YNB Oleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8439 and 8440 are separated by 214 nucleotides mRNA_71: 8439 - HMMPfam-YABBY protein-PF04690,SUPERFAMILY--SSF47095, at 167,576 to 168,117 8439 mRNA_72: 8440 - BLAST apses-domain-containing protein [Moesziomyces ant..., at 168,332 to 168,818 8440

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
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167,411 + +2.4
167,413 + +0.2
168,130 - +0.4
168,149 + +0.1
168,153 - +0.8
168,297 - -0.2
168,458 + 8440 mRNA_72 0.26 +1.2
168,476 + 8440 mRNA_72 0.30 -0.6
168,586 + 8440 mRNA_72 0.52 -0.3
168,596 + 8440 mRNA_72 0.54 -0.8
168,732 + 8440 mRNA_72 0.82 -0.3
168,735 + 8440 mRNA_72 0.83 -0.1
168,789 + -1.4
168,846 + -0.0
168,861 - -0.5
168,864 - -0.5
168,906 + +0.3
168,935 - -0.6
169,155 - -0.9
169,182 - +1.0
169,202 + -0.7
169,356 + -0.3
169,358 - -1.1
169,648 - -0.0
169,668 - +0.1
169,790 - -0.2

Or see this region's nucleotide sequence