Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_85

Experiment: YNB Oleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8452 and 8453 are separated by 293 nucleotides8453 and 8454 are separated by 301 nucleotides mRNA_84: 8452 - K01522 FHIT bis(5'-adenosyl)-triphosphatase, at 201,823 to 202,716 8452 mRNA_85: 8453 - BLAST glutamine synthetase [Sanghuangporus baumii], at 203,010 to 204,516 8453 mRNA_86: 8454 - K01452 E3.5.1.41 chitin deacetylase, at 204,818 to 206,685 8454

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
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202,233 + 8452 mRNA_84 0.46 -1.1
202,687 - +0.1
202,699 - -1.8
202,703 - +0.9
202,705 + -0.1
202,930 + -1.2
203,111 + +0.3
203,119 - +0.7
203,124 - -0.3
203,126 + +0.3
203,403 + 8453 mRNA_85 0.26 -0.0
203,409 + 8453 mRNA_85 0.26 +0.3
203,454 - 8453 mRNA_85 0.29 -1.7
203,695 - 8453 mRNA_85 0.45 +0.6
203,771 - 8453 mRNA_85 0.50 +1.1
204,184 - 8453 mRNA_85 0.78 -1.3
204,287 + 8453 mRNA_85 0.85 -0.3
204,288 - 8453 mRNA_85 0.85 +0.2
204,696 - +0.5
204,907 - +0.6
205,019 - 8454 mRNA_86 0.11 +0.2
205,273 - 8454 mRNA_86 0.24 +1.0
205,322 + 8454 mRNA_86 0.27 -1.4

Or see this region's nucleotide sequence