Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_101

Experiment: YNB Oleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8468 and 8469 are separated by 605 nucleotides8469 and 8470 are separated by 663 nucleotides mRNA_100: 8468 - K03686 dnaJ molecular chaperone DnaJ, at 241,337 to 243,142 8468 mRNA_101: 8469 - K18719 NUP82 nucleoporin NUP82, at 243,748 to 246,867 8469 mRNA_102: 8470 - HMMPfam-PQ loop repeat-PF04193,SMART-Repeated motif present between transmembrane helices in cystinosin, yeast ERS1p, mannose-P-dolichol utilization defect 1, and other hypothetical proteins.-SM00679, at 247,531 to 248,783 8470

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
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243,486 - +0.2
243,503 + -2.1
243,509 - -0.4
243,512 + +0.6
243,643 - -1.2
243,649 + -0.4
243,658 + -0.1
246,765 + +1.1
246,820 + -1.0
246,821 - +1.8
247,050 + -0.3
247,075 - -0.9
247,094 - +0.4
247,125 + -0.9
247,146 - +0.3
247,147 - +0.0
247,147 + +1.9
247,164 + -0.7
247,165 - -2.0
247,170 + +0.2
247,180 + -0.1
247,762 + 8470 mRNA_102 0.18 +1.2

Or see this region's nucleotide sequence