Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_110

Experiment: YNB Oleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8477 and 8478 are separated by 267 nucleotides8478 and 8479 are separated by 112 nucleotides mRNA_109: 8477 - Hypothetical Protein, at 259,065 to 259,869 8477 mRNA_110: 8478 - KOG3399 Predicted Yippee-type zinc-binding protein, at 260,137 to 260,817 8478 mRNA_111: 8479 - KOG0254 Predicted transporter (major facilitator superfamily), at 260,930 to 263,760 8479

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
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259,287 - 8477 mRNA_109 0.28 +1.5
259,765 + 8477 mRNA_109 0.87 +1.2
259,910 - +1.3
259,917 - -0.0
259,955 + +0.6
259,992 - +0.5
260,130 + -0.2
260,258 + 8478 mRNA_110 0.18 -0.2
260,272 - 8478 mRNA_110 0.20 -1.6
260,309 + 8478 mRNA_110 0.25 +0.6
260,420 + 8478 mRNA_110 0.42 -2.2
260,424 + 8478 mRNA_110 0.42 +0.7
260,436 - 8478 mRNA_110 0.44 +0.0
260,752 + -0.2
260,890 - -0.1
260,921 + +0.6
260,990 + -0.7
261,103 - +0.4
261,144 + +0.3
261,150 - -1.1
261,760 + 8479 mRNA_111 0.29 -0.1

Or see this region's nucleotide sequence