Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_129

Experiment: YNB Oleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8496 and 8497 are separated by 635 nucleotides8497 and 8498 are separated by 90 nucleotides mRNA_128: 8496 - K11592 DICER1, DCR1 endoribonuclease Dicer, at 307,596 to 312,359 8496 mRNA_129: 8497 - SUPERFAMILY--SSF56112, at 312,995 to 315,210 8497 mRNA_130: 8498 - BLAST 60S ribosomal protein L18-B [Termitomyces sp. J132], at 315,301 to 316,369 8498

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
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312,419 - -0.6
312,538 - +0.1
312,542 - +0.2
312,564 - -0.5
312,708 + -0.4
312,811 - +0.8
312,844 - +0.7
312,966 - -0.0
312,983 - -0.0
312,985 + -0.5
312,999 + -0.0
313,176 + -0.5
313,308 + 8497 mRNA_129 0.14 +0.9
313,308 + 8497 mRNA_129 0.14 -0.6
313,481 + 8497 mRNA_129 0.22 -0.7
313,486 - 8497 mRNA_129 0.22 -0.9
313,593 + 8497 mRNA_129 0.27 +0.3
313,604 + 8497 mRNA_129 0.27 -0.4
313,979 + 8497 mRNA_129 0.44 +0.7
314,043 + 8497 mRNA_129 0.47 +0.3
314,200 - 8497 mRNA_129 0.54 -1.5
315,038 + +0.7
315,182 + -0.4
315,207 - +0.6

Or see this region's nucleotide sequence