Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_163

Experiment: YNB Oleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8530 and 8531 are separated by 259 nucleotides8531 and 8532 are separated by 299 nucleotides mRNA_162: 8530 - BLAST NADH dehydrogenase [ubiquinone] 1 alpha subcomplex su..., at 401,367 to 403,016 8530 mRNA_163: 8531 - Hypothetical Protein, at 403,276 to 404,295 8531 mRNA_164: 8532 - Hypothetical Protein, at 404,595 to 407,143 8532

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
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402,758 + 8530 mRNA_162 0.84 +0.3
403,510 - 8531 mRNA_163 0.23 +1.3
403,520 - 8531 mRNA_163 0.24 +1.2
403,681 + 8531 mRNA_163 0.40 -1.0
403,868 + 8531 mRNA_163 0.58 -0.1
403,941 - 8531 mRNA_163 0.65 +0.3
403,988 - 8531 mRNA_163 0.70 +0.5
404,253 + +0.2
404,422 - +0.9
404,437 + -0.6
404,441 + +0.9
404,558 + +0.1
404,576 + +0.2
405,261 - 8532 mRNA_164 0.26 +0.2
405,269 + 8532 mRNA_164 0.26 -0.3

Or see this region's nucleotide sequence