Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_207

Experiment: YNB Oleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8575 and 8576 are separated by 405 nucleotides mRNA_207: 8575 - K01892 HARS, hisS histidyl-tRNA synthetase, at 506,523 to 508,733 8575 mRNA_208: 8576 - K19270 yfbT, yniC sugar-phosphatase, at 509,139 to 510,075 8576

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
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505,792 - +0.2
505,816 - -0.6
506,084 - -0.3
506,087 + -0.6
506,118 + -0.5
506,257 - +0.0
506,258 - +0.6
506,259 + -0.1
506,276 - -0.5
506,303 + +0.2
506,400 + -0.9
508,504 - 8575 mRNA_207 0.90 -2.8
509,080 + +0.2
509,088 + -0.6
509,405 - 8576 mRNA_208 0.28 -0.2
509,546 - 8576 mRNA_208 0.43 -0.6

Or see this region's nucleotide sequence