Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_212

Experiment: YNB Oleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8579 and 8580 are separated by 645 nucleotides8580 and 8581 are separated by 136 nucleotides mRNA_211: 8579 - K00432 gpx glutathione peroxidase, at 519,549 to 520,466 8579 mRNA_212: 8580 - K01194 TREH, treA, treF alpha,alpha-trehalase, at 521,112 to 523,919 8580 mRNA_213: 8581 - KOG1362 Choline transporter-like protein, at 524,056 to 525,912 8581

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
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520,547 - -1.3
520,564 + -0.8
520,690 + +0.9
520,708 + +0.2
520,816 - -0.9
520,831 + -0.5
520,833 + -1.2
520,836 + -1.2
520,838 - -1.1
520,842 + +0.6
520,847 - -0.5
520,851 - +0.2
520,853 - -0.4
520,855 + -0.0
520,867 + -1.2
520,867 + -0.8
520,886 - -0.3
520,886 - +0.2
520,887 + -0.7
520,893 - +2.2
520,948 - +0.0
520,984 - +0.7
521,019 - -2.0
521,032 - -0.3
521,108 - +0.5
521,120 - +0.5
521,273 - -0.7
521,309 - +0.3
521,474 + 8580 mRNA_212 0.13 +0.5
521,949 + 8580 mRNA_212 0.30 +1.1
522,349 + 8580 mRNA_212 0.44 -1.0
522,733 - 8580 mRNA_212 0.58 -0.6
522,821 - 8580 mRNA_212 0.61 -1.0
522,863 + 8580 mRNA_212 0.62 +0.1
522,965 - 8580 mRNA_212 0.66 -1.9
523,266 - 8580 mRNA_212 0.77 -0.4
523,296 - 8580 mRNA_212 0.78 +0.1
523,386 - 8580 mRNA_212 0.81 -0.8
523,414 - 8580 mRNA_212 0.82 -1.2
523,425 - 8580 mRNA_212 0.82 +0.6
523,425 + 8580 mRNA_212 0.82 -0.9
523,431 + 8580 mRNA_212 0.83 +0.4
523,431 + 8580 mRNA_212 0.83 +0.6
523,469 + 8580 mRNA_212 0.84 +0.4
523,484 + 8580 mRNA_212 0.84 -0.9
523,527 + 8580 mRNA_212 0.86 -0.7
523,531 - 8580 mRNA_212 0.86 +1.4
523,539 + 8580 mRNA_212 0.86 -0.7
523,551 - 8580 mRNA_212 0.87 +1.3
523,554 + 8580 mRNA_212 0.87 +0.9
523,562 + 8580 mRNA_212 0.87 -0.2
523,568 + 8580 mRNA_212 0.87 -0.1
523,658 - -0.1
523,659 + +0.1
523,673 + -0.1
523,683 + -0.3
523,707 - -0.8
523,713 + -0.0
523,885 + -0.0
523,887 - +1.2
523,962 - -1.0
523,972 + -0.2
523,973 - +0.4
523,986 - -0.3
524,008 - +0.5
524,024 - +0.5
524,358 + 8581 mRNA_213 0.16 +0.2
524,838 - 8581 mRNA_213 0.42 -0.2
524,848 + 8581 mRNA_213 0.43 +0.6

Or see this region's nucleotide sequence