Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_266

Experiment: YNB Oleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8633 and 8634 are separated by 141 nucleotides8634 and 8635 are separated by 345 nucleotides mRNA_265: 8633 - K00876 udk, UCK uridine kinase, at 637,479 to 639,717 8633 mRNA_266: 8634 - KOG0111 Cyclophilin-type peptidyl-prolyl cis-trans isomerase, at 639,859 to 640,522 8634 mRNA_267: 8635 - K03381 catA catechol 1,2-dioxygenase, at 640,868 to 642,235 8635

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
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638,972 - 8633 mRNA_265 0.67 +0.2
638,993 - 8633 mRNA_265 0.68 +0.2
639,691 - +0.2
639,727 - +0.6
639,835 + +0.1
639,879 - +0.2
640,023 - 8634 mRNA_266 0.25 +1.5
640,581 - -0.5
640,584 + -1.5
640,589 - -1.5
640,598 + -0.9
641,347 + 8635 mRNA_267 0.35 +1.2
641,430 + 8635 mRNA_267 0.41 -0.7

Or see this region's nucleotide sequence