Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_296

Experiment: YNB Oleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8663 and 8664 are separated by 125 nucleotides8664 and 8665 are separated by 315 nucleotides mRNA_295: 8663 - KOG3069 Peroxisomal NUDIX hydrolase, at 696,083 to 698,097 8663 mRNA_296: 8664 - K20177 VPS3, TGFBRAP1 vacuolar protein sorting-associated protein 3, at 698,223 to 702,275 8664 mRNA_297: 8665 - Hypothetical Protein, at 702,591 to 702,936 8665

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
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697,472 + 8663 mRNA_295 0.69 -0.3
697,479 - 8663 mRNA_295 0.69 -0.1
697,496 + 8663 mRNA_295 0.70 +0.3
697,604 + 8663 mRNA_295 0.75 +1.6
697,608 - 8663 mRNA_295 0.76 +0.8
697,733 - 8663 mRNA_295 0.82 -0.1
697,741 + 8663 mRNA_295 0.82 -0.5
697,751 - 8663 mRNA_295 0.83 +0.4
697,762 - 8663 mRNA_295 0.83 -0.1
697,896 - +1.5
697,906 - -1.5
698,034 + +0.5
698,174 - -0.1
698,177 + +1.0
698,189 + -1.4
698,194 + -0.3
698,199 + -0.0
698,203 + -0.4
699,653 - 8664 mRNA_296 0.35 -1.1
700,609 - 8664 mRNA_296 0.59 -3.5
700,831 - 8664 mRNA_296 0.64 -0.3
701,873 - -1.4
702,351 + +0.2
702,491 + +0.1
702,510 + -0.5
702,532 - +0.2
702,534 - +0.3
702,649 - 8665 mRNA_297 0.17 +0.5
702,660 - 8665 mRNA_297 0.20 +0.7
702,796 + 8665 mRNA_297 0.59 -0.4
703,043 - -0.4

Or see this region's nucleotide sequence