Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_311

Experiment: YNB Oleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8679 and 8680 are separated by 283 nucleotides mRNA_311: 8679 - KOG1001 Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily, at 737,521 to 741,046 8679 mRNA_312: 8680 - K20103 DDX60 ATP-dependent RNA helicase DDX60, at 741,330 to 747,566 8680

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
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736,621 + -1.1
736,621 - -0.4
736,662 - -1.4
736,747 + -1.2
736,766 + -0.8
736,936 - -0.8
736,988 + -1.0
737,567 - -0.2
737,986 - 8679 mRNA_311 0.13 -1.0
738,594 + 8679 mRNA_311 0.30 -0.0
738,727 - 8679 mRNA_311 0.34 +0.2
738,775 - 8679 mRNA_311 0.36 -0.5
738,776 + 8679 mRNA_311 0.36 -0.8
739,001 + 8679 mRNA_311 0.42 +0.4
739,316 - 8679 mRNA_311 0.51 +1.3
739,343 - 8679 mRNA_311 0.52 -2.0
739,346 + 8679 mRNA_311 0.52 -0.0
739,478 - 8679 mRNA_311 0.56 +0.4
739,615 + 8679 mRNA_311 0.59 -0.3
739,808 + 8679 mRNA_311 0.65 -0.8
740,055 + 8679 mRNA_311 0.72 +0.1
740,190 + 8679 mRNA_311 0.76 -1.6
740,440 - 8679 mRNA_311 0.83 -1.0
740,467 - 8679 mRNA_311 0.84 +0.0
740,595 - 8679 mRNA_311 0.87 -3.0
740,926 - -0.3
740,930 - -0.2
741,064 - -1.5
741,064 - -0.1
741,066 - +0.7
741,067 - +0.2
741,068 - +0.9
741,085 + +0.3
741,325 - -2.1
741,330 - -0.9
741,331 - +0.2
741,342 + +0.4
741,350 - +0.0
741,350 - -0.3
741,352 - +1.0
741,357 + -0.6
741,359 - -0.1
741,361 + -0.5
741,366 + -2.6

Or see this region's nucleotide sequence