Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_481

Experiment: YNB Oleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8848 and 8849 are separated by 249 nucleotides mRNA_480: 8848 - ProSiteProfiles-Myb-type HTH DNA-binding domain profile.-PS51294,SUPERFAMILY--SSF46689, at 1,117,742 to 1,121,401 8848 mRNA_481: 8849 - K11756 RSC1_2 chromatin structure-remodeling complex subunit RSC1/2, at 1,121,651 to 1,124,733 8849

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
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1,121,408 + +0.2
1,121,425 + -0.6
1,122,009 + 8849 mRNA_481 0.12 +0.3
1,122,858 + 8849 mRNA_481 0.39 +0.1
1,123,146 + 8849 mRNA_481 0.48 +0.6
1,123,526 + 8849 mRNA_481 0.61 -0.9
1,123,753 - 8849 mRNA_481 0.68 -1.1
1,124,773 - +0.3
1,124,773 + -0.3
1,124,773 - +0.4
1,124,784 + -0.2
1,124,794 + +0.7
1,124,794 + -0.2
1,124,795 - +1.7
1,124,802 + +0.3
1,124,828 + +0.3
1,124,899 - +0.1
1,124,901 + +0.5
1,124,913 - +0.8
1,124,918 + -0.8
1,124,936 + -1.3
1,124,961 - +0.3
1,124,961 + -0.4
1,124,962 - +0.4
1,124,991 + -0.2
1,125,025 - -0.1
1,125,028 + -0.8
1,125,028 + -1.4
1,125,032 + -0.3
1,125,035 + +0.9
1,125,047 + +1.2
1,125,048 - -0.4
1,125,050 + +0.3
1,125,087 - -0.2
1,125,089 + -0.1
1,125,089 + -0.7
1,125,222 - -2.5
1,125,235 + -0.3
1,125,239 + +0.2
1,125,293 - -0.7
1,125,296 + -1.1
1,125,304 - +0.5
1,125,318 - -1.8
1,125,323 - +0.7
1,125,330 + +0.9
1,125,333 - -0.8
1,125,339 + +0.0
1,125,350 + -0.6
1,125,352 + +0.1
1,125,353 + +0.8
1,125,360 - -1.8
1,125,361 + +1.1
1,125,365 - +0.1
1,125,372 + +0.1
1,125,428 + +0.2
1,125,435 + -0.7
1,125,459 - -0.4
1,125,459 + +0.9
1,125,488 + +0.4
1,125,610 - -0.2
1,125,687 - +1.0
1,125,700 + -0.1
1,125,722 - +0.1

Or see this region's nucleotide sequence