Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_506

Experiment: YNB Oleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8874 and 8875 are separated by 794 nucleotides mRNA_506: 8874 - K08793 STK32, YANK serine/threonine kinase 32, at 1,203,196 to 1,205,360 8874 mRNA_507: 8875 - K19347 SUN1_2 SUN domain-containing protein 1/2, at 1,206,155 to 1,210,007 8875

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
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1,202,263 - +0.2
1,202,271 - +0.4
1,202,367 + +0.3
1,202,550 + -0.9
1,202,564 + -0.3
1,202,682 - -0.1
1,202,705 + -0.2
1,202,713 + -0.8
1,202,718 + -0.4
1,202,853 - +0.1
1,202,854 + -1.3
1,202,854 + +0.7
1,202,877 + -1.9
1,202,901 - -0.2
1,202,977 - +0.2
1,203,002 + +0.1
1,203,044 + +0.1
1,203,053 + +0.4
1,203,173 + -0.1
1,203,185 + -0.3
1,203,189 + -0.0
1,203,303 + -0.1
1,203,324 + -0.2
1,203,339 + -1.1
1,203,473 + 8874 mRNA_506 0.13 -1.1
1,203,627 + 8874 mRNA_506 0.20 -0.5
1,203,742 + 8874 mRNA_506 0.25 -0.2
1,204,177 - 8874 mRNA_506 0.45 +0.0
1,204,440 - 8874 mRNA_506 0.57 -1.0
1,204,635 - 8874 mRNA_506 0.66 -0.8
1,204,803 - 8874 mRNA_506 0.74 -0.4
1,204,888 + 8874 mRNA_506 0.78 +0.3
1,205,137 - 8874 mRNA_506 0.90 +0.4
1,205,497 - +1.3
1,205,797 - +0.3

Or see this region's nucleotide sequence