Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_586

Experiment: YNB Oleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8953 and 8954 are separated by 164 nucleotides8954 and 8955 are separated by 348 nucleotides mRNA_585: 8953 - HMMPfam-Polynucleotide kinase 3 phosphatase-PF08645,HMMPfam-AAA domain-PF13671,SUPERFAMILY--SSF52540,SUPERFAMILY--SSF56784, at 1,396,746 to 1,398,490 8953 mRNA_586: 8954 - K20291 COG4, COD1 conserved oligomeric Golgi complex subunit 4, at 1,398,655 to 1,401,525 8954 mRNA_587: 8955 - K10846 ERCC5, XPG, RAD2 DNA excision repair protein ERCC-5, at 1,401,874 to 1,405,590 8955

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
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1,397,776 - 8953 mRNA_585 0.59 -0.3
1,397,919 + 8953 mRNA_585 0.67 -1.2
1,398,692 - +1.6
1,401,174 + 8954 mRNA_586 0.88 -1.7
1,401,918 - -0.1
1,401,997 + -0.1
1,402,056 + -0.1
1,402,075 + +1.8
1,402,517 + 8955 mRNA_587 0.17 -0.2

Or see this region's nucleotide sequence