Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_649

Experiment: YNB Oleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9016 and 9017 are separated by 168 nucleotides9017 and 9018 are separated by 191 nucleotides mRNA_648: 9016 - K03424 tatD TatD DNase family protein, at 1,557,558 to 1,558,767 9016 mRNA_649: 9017 - K15192 BTAF1, MOT1 TATA-binding protein-associated factor, at 1,558,936 to 1,565,576 9017 mRNA_650: 9018 - KOG0603 Ribosomal protein S6 kinase, at 1,565,768 to 1,568,049 9018

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
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1,558,513 + 9016 mRNA_648 0.79 -1.4
1,558,515 - 9016 mRNA_648 0.79 +0.3
1,558,518 - 9016 mRNA_648 0.79 +1.3
1,558,521 - 9016 mRNA_648 0.80 +1.0
1,558,545 - 9016 mRNA_648 0.82 -0.1
1,558,661 + +0.1
1,558,678 - +0.1
1,558,693 + -0.8
1,558,817 + +1.1
1,558,822 - -1.9
1,558,829 + +0.6
1,558,839 - -1.0
1,561,444 + 9017 mRNA_649 0.38 +1.2
1,565,862 + -0.2
1,565,931 - -0.6
1,566,164 + 9018 mRNA_650 0.17 -0.5
1,566,169 + 9018 mRNA_650 0.18 +0.8

Or see this region's nucleotide sequence