Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_655

Experiment: YNB Oleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9022 and 9023 are separated by 283 nucleotides mRNA_654: 9022 - K14809 DDX55, SPB4 ATP-dependent RNA helicase DDX55/SPB4, at 1,573,300 to 1,575,930 9022 mRNA_655: 9023 - K11246 SHO1 SHO1 osmosensor, at 1,576,214 to 1,578,020 9023

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
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1,575,757 - +0.9
1,576,065 - +1.2
1,576,074 + +0.9
1,576,082 - -0.4
1,576,096 - -0.4
1,576,101 - -0.8
1,576,103 + +0.6
1,576,108 - -0.4
1,576,125 - +0.1
1,576,126 + +0.5
1,576,127 - -0.3
1,576,137 - -0.6
1,576,138 + +0.7
1,576,142 - -0.7
1,576,143 + +0.9
1,576,144 - +0.2
1,576,145 - +0.5
1,576,150 + -0.6
1,576,154 - -0.9
1,576,160 - +0.8
1,576,160 + +0.7
1,576,160 - +0.3
1,576,173 - +0.2
1,576,174 + -0.3
1,576,181 - +0.1
1,576,181 + +0.6
1,576,188 - -0.4
1,576,189 - -0.4
1,576,195 + -0.2
1,576,195 + -0.9
1,576,195 + -0.4
1,576,199 + -1.6
1,576,199 + -0.1
1,576,248 - +0.8
1,576,250 - -1.9
1,576,253 - +0.3
1,576,254 + +0.3
1,576,260 + -0.2
1,576,260 + -0.4
1,576,268 - +1.4
1,576,274 - -0.6
1,576,277 + +0.2
1,576,281 + -0.8
1,576,291 + +0.7
1,576,291 - -0.5
1,576,400 - 9023 mRNA_655 0.10 +0.2
1,576,431 - 9023 mRNA_655 0.12 +0.6
1,576,563 + 9023 mRNA_655 0.19 +1.0
1,576,685 - 9023 mRNA_655 0.26 -0.5
1,576,697 + 9023 mRNA_655 0.27 +0.2
1,576,816 + 9023 mRNA_655 0.33 +0.2
1,576,871 + 9023 mRNA_655 0.36 +1.5
1,577,660 - 9023 mRNA_655 0.80 -0.8
1,577,713 + 9023 mRNA_655 0.83 +1.0
1,577,714 - 9023 mRNA_655 0.83 +1.8
1,577,865 - -0.9
1,577,889 + -0.3
1,578,130 - +0.2
1,578,170 + +0.0
1,578,309 - -0.1
1,578,319 + -0.1
1,578,554 + -0.2

Or see this region's nucleotide sequence