Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_658

Experiment: YNB Oleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9025 and 9026 are separated by 258 nucleotides9026 and 9027 are separated by 687 nucleotides mRNA_657: 9025 - Hypothetical Protein, at 1,581,260 to 1,582,108 9025 mRNA_658: 9026 - K11842 USP12_46 ubiquitin carboxyl-terminal hydrolase 12/46, at 1,582,367 to 1,585,803 9026 mRNA_659: 9027 - Hypothetical Protein, at 1,586,491 to 1,589,993 9027

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
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1,581,418 + 9025 mRNA_657 0.19 -0.1
1,581,525 + 9025 mRNA_657 0.31 +0.1
1,581,980 - 9025 mRNA_657 0.85 +1.3
1,582,834 + 9026 mRNA_658 0.14 +1.6
1,583,227 - 9026 mRNA_658 0.25 +0.1
1,583,241 + 9026 mRNA_658 0.25 -0.6
1,583,393 + 9026 mRNA_658 0.30 -0.4
1,583,432 + 9026 mRNA_658 0.31 +1.0
1,584,589 + 9026 mRNA_658 0.65 +1.5
1,584,976 - 9026 mRNA_658 0.76 -0.2
1,585,011 + 9026 mRNA_658 0.77 +0.2
1,585,155 - 9026 mRNA_658 0.81 +0.2
1,585,262 - 9026 mRNA_658 0.84 +0.5
1,585,270 + 9026 mRNA_658 0.84 +0.3
1,585,271 - 9026 mRNA_658 0.84 +0.9
1,585,282 - 9026 mRNA_658 0.85 +0.8
1,585,282 + 9026 mRNA_658 0.85 -2.2
1,585,298 - 9026 mRNA_658 0.85 +0.9
1,585,304 - 9026 mRNA_658 0.85 +0.7
1,585,322 - 9026 mRNA_658 0.86 +1.3
1,585,327 - 9026 mRNA_658 0.86 -0.1
1,585,328 + 9026 mRNA_658 0.86 -0.5
1,585,354 + 9026 mRNA_658 0.87 +0.2
1,585,447 - 9026 mRNA_658 0.90 -0.2
1,585,458 + 9026 mRNA_658 0.90 +0.4
1,585,475 + -0.1
1,585,591 - +0.1
1,585,600 + +0.5
1,585,609 + +0.9
1,585,617 + +0.6
1,585,617 - +0.8
1,585,623 - -0.5
1,585,650 + -1.9
1,585,738 + +1.9
1,585,743 - +0.1
1,585,751 - -0.3
1,585,762 + +0.9
1,585,779 - +1.0
1,585,881 - +0.1
1,585,897 + -0.5
1,585,912 - -0.1
1,586,005 + +0.4
1,586,047 + -2.7
1,586,068 - -1.4
1,586,089 + +1.5
1,586,172 - +0.6
1,586,220 - -0.2
1,586,708 - -0.0

Or see this region's nucleotide sequence