Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_671

Experiment: YNB Oleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9038 and 9039 are separated by 326 nucleotides9039 and 9040 are separated by 63 nucleotides mRNA_670: 9038 - Hypothetical Protein, at 1,615,101 to 1,618,146 9038 mRNA_671: 9039 - K03846 ALG9 alpha-1,2-mannosyltransferase, at 1,618,473 to 1,620,853 9039 mRNA_672: 9040 - Hypothetical Protein, at 1,620,917 to 1,621,557 9040

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
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1,617,812 + 9038 mRNA_670 0.89 -0.5
1,617,910 - -1.7
1,618,126 - -1.8
1,618,206 + +0.0
1,618,221 - +0.2
1,618,355 - +0.3
1,618,375 + +0.4
1,618,386 + +0.4
1,618,390 + -0.2
1,618,423 + -1.1
1,618,502 + +1.1
1,618,504 + +0.4
1,618,527 + -2.8
1,618,531 + -0.9
1,618,823 - 9039 mRNA_671 0.15 +0.5
1,619,121 + 9039 mRNA_671 0.27 +1.1
1,619,543 + 9039 mRNA_671 0.45 +0.4
1,619,561 + 9039 mRNA_671 0.46 -1.0
1,620,439 - 9039 mRNA_671 0.83 +0.4
1,620,800 - -0.3
1,621,002 + 9040 mRNA_672 0.13 +0.0
1,621,018 - 9040 mRNA_672 0.16 +0.9
1,621,031 - 9040 mRNA_672 0.18 -0.5
1,621,162 - 9040 mRNA_672 0.38 +0.3
1,621,757 - +0.7

Or see this region's nucleotide sequence