Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_686

Experiment: YNB Oleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9053 and 9054 are separated by 513 nucleotides9054 and 9055 are separated by 599 nucleotides mRNA_685: 9053 - K10577 UBE2I, UBC9 ubiquitin-conjugating enzyme E2 I, at 1,643,444 to 1,644,500 9053 mRNA_686: 9054 - K06867 K06867 uncharacterized protein, at 1,645,014 to 1,645,916 9054 mRNA_687: 9055 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 1,646,516 to 1,647,919 9055

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
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1,644,546 + -0.3
1,644,547 + +1.2
1,644,811 - +0.5
1,644,848 + -0.4
1,644,859 + -1.9
1,644,979 - +0.3
1,645,144 - 9054 mRNA_686 0.14 +0.1
1,645,437 - 9054 mRNA_686 0.47 +0.2
1,645,577 + 9054 mRNA_686 0.62 +0.3
1,645,703 - 9054 mRNA_686 0.76 -0.7
1,645,869 + -0.7
1,645,992 - -0.7
1,645,993 + -0.3
1,645,995 - -0.3
1,645,995 - -0.1
1,646,004 - +1.1
1,646,009 - +0.0
1,646,015 - -0.1
1,646,018 + -1.1
1,646,024 + +0.2
1,646,024 + +1.2
1,646,033 - -0.9
1,646,150 - -0.6
1,646,154 - +0.8
1,646,438 + +0.2
1,646,455 - -0.1
1,646,461 + -0.3
1,646,871 - 9055 mRNA_687 0.25 +0.4
1,646,889 + 9055 mRNA_687 0.27 +0.2

Or see this region's nucleotide sequence