Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_721

Experiment: YNB Oleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9088 and 9089 are separated by 115 nucleotides9089 and 9090 are separated by 552 nucleotides mRNA_720: 9088 - K00993 EPT1 ethanolaminephosphotransferase, at 1,718,861 to 1,720,406 9088 mRNA_721: 9089 - Hypothetical Protein, at 1,720,522 to 1,720,982 9089 mRNA_722: 9090 - HMMPfam-Thiopurine S-methyltransferase (TPMT)-PF05724,ProSiteProfiles-Thiopurine or thiol or thiocyanate S-methyltransferase (TPMT) family profile.-PS51585,SUPERFAMILY--SSF53335, at 1,721,535 to 1,722,519 9090

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
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1,719,625 - 9088 mRNA_720 0.49 +1.1
1,720,329 - +0.4
1,720,339 + +0.1
1,721,110 + +0.3
1,721,218 + +0.3
1,721,236 + +0.1
1,721,237 + +1.0
1,721,374 - -0.2
1,721,520 + +0.3
1,721,529 - -0.3
1,721,534 - -1.1
1,721,551 - -0.2
1,721,685 + 9090 mRNA_722 0.15 +0.9
1,721,700 + 9090 mRNA_722 0.17 +0.9

Or see this region's nucleotide sequence