Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_737

Experiment: YNB Oleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9104 and 9105 are separated by 309 nucleotides9105 and 9106 are separated by 580 nucleotides mRNA_736: 9104 - K00034 gdh glucose 1-dehydrogenase, at 1,755,244 to 1,756,596 9104 mRNA_737: 9105 - HMMPfam-EthD domain-PF07110,SUPERFAMILY--SSF54909,TIGRFAM-TIGR02118 conserved hypothetical protein-TIGR02118, at 1,756,906 to 1,757,418 9105 mRNA_738: 9106 - K06606 iolI 2-keto-myo-inositol isomerase, at 1,757,999 to 1,760,705 9106

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
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1,755,984 - 9104 mRNA_736 0.55 +1.0
1,756,316 - 9104 mRNA_736 0.79 +0.5
1,756,409 + 9104 mRNA_736 0.86 +0.9
1,756,755 - -0.8
1,756,803 + -0.2
1,756,809 - +0.0
1,756,821 + -1.1
1,756,824 - -0.2
1,756,853 + +0.1
1,757,372 - -0.6
1,757,377 + +0.8
1,757,378 + -2.2
1,757,521 + +1.0
1,757,837 - +0.5
1,757,843 - -0.5
1,757,925 - -0.1
1,757,981 + -0.7
1,758,003 - +0.3
1,758,003 - -0.4
1,758,394 - 9106 mRNA_738 0.15 +0.7

Or see this region's nucleotide sequence