Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_811

Experiment: YNB Oleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9179 and 9180 are separated by 472 nucleotides mRNA_811: 9179 - Interpro Glycosyl-transferase for dystroglycan, at 1,929,114 to 1,931,965 9179 mRNA_812: 9180 - K00474 TMLHE trimethyllysine dioxygenase, at 1,932,438 to 1,934,306 9180

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
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1,928,115 - +0.4
1,928,122 + +0.1
1,928,289 - -0.2
1,928,290 + -1.6
1,928,290 + -0.7
1,928,313 - -0.4
1,928,319 - +2.0
1,928,319 - +0.7
1,928,436 - -0.2
1,928,458 - +0.0
1,928,459 + +2.0
1,928,465 + +1.3
1,928,467 - +0.1
1,928,477 + -0.3
1,928,484 + -0.2
1,928,592 + +0.1
1,928,595 + -0.2
1,928,598 - +0.1
1,928,605 + +0.0
1,928,616 - -0.2
1,928,620 - -1.3
1,928,625 + +0.0
1,928,637 - +0.2
1,928,645 + +0.4
1,928,738 + +0.3
1,928,782 + +1.2
1,929,084 - -0.7
1,929,220 - -0.6
1,929,395 - -0.4
1,929,398 + -0.4
1,929,800 - 9179 mRNA_811 0.24 +4.1
1,930,905 - 9179 mRNA_811 0.63 +2.0
1,931,057 + 9179 mRNA_811 0.68 -0.4
1,931,379 - 9179 mRNA_811 0.79 +1.1
1,931,434 + 9179 mRNA_811 0.81 +1.6
1,932,103 - +0.3

Or see this region's nucleotide sequence