Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_815

Experiment: YNB Oleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9182 and 9183 are separated by 127 nucleotides9183 and 9184 are separated by 735 nucleotides mRNA_814: 9182 - K15075 MET18, MMS19 DNA repair/transcription protein MET18/MMS19, at 1,937,554 to 1,941,739 9182 mRNA_815: 9183 - K04555 UBE2G2, UBC7 ubiquitin-conjugating enzyme E2 G2, at 1,941,867 to 1,942,865 9183 mRNA_816: 9184 - KOG0783 Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains, at 1,943,601 to 1,948,343 9184

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
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1,941,795 + +0.2
1,941,963 + -3.8
1,942,088 + 9183 mRNA_815 0.22 -3.6
1,942,232 - 9183 mRNA_815 0.37 -3.2
1,943,087 + +0.2
1,943,089 + +0.4
1,943,394 - +0.4
1,943,397 + +0.8
1,943,530 - -1.0
1,943,540 - -1.3
1,943,687 - +0.8
1,943,812 - -0.4
1,943,813 - -1.1
1,943,826 - -0.0
1,943,835 + +0.0
1,943,846 + +0.5

Or see this region's nucleotide sequence