Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_823

Experiment: YNB Oleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9190 and 9191 are separated by 133 nucleotides9191 and 9192 are separated by 373 nucleotides mRNA_822: 9190 - HMMPfam-Sec7 domain-PF01369,HMMPfam-Pleckstrin homology domain-PF15410,ProSiteProfiles-PH domain profile.-PS50003,ProSiteProfiles-SEC7 domain profile.-PS50190,SMART-Sec7 domain-SM00222,SMART-Pleckstrin homology domain.-SM00233,SUPERFAMILY--SSF48425,SUPERFAMILY--SSF50729, at 1,965,379 to 1,971,450 9190 mRNA_823: 9191 - HMMPfam-Fungal domain of unknown function (DUF1712)-PF08217, at 1,971,584 to 1,974,293 9191 mRNA_824: 9192 - Hypothetical Protein, at 1,974,667 to 1,975,574 9192

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
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1,970,946 - +0.8
1,971,236 - +0.7
1,971,385 + -0.3
1,971,535 - +0.2
1,971,795 - -0.8
1,971,829 + +0.2
1,971,829 + -0.2
1,971,834 + -1.6
1,972,246 + 9191 mRNA_823 0.24 -0.6
1,972,428 + 9191 mRNA_823 0.31 -1.1
1,972,567 + 9191 mRNA_823 0.36 -1.5
1,972,862 - 9191 mRNA_823 0.47 +0.1
1,972,866 + 9191 mRNA_823 0.47 -0.4
1,972,870 + 9191 mRNA_823 0.47 +0.4
1,972,991 - 9191 mRNA_823 0.52 -1.8
1,973,143 + 9191 mRNA_823 0.58 -0.6
1,973,302 - 9191 mRNA_823 0.63 -1.6
1,973,374 - 9191 mRNA_823 0.66 +0.1
1,973,444 + 9191 mRNA_823 0.69 -0.6
1,973,719 - 9191 mRNA_823 0.79 +0.5
1,974,203 - -1.1
1,974,294 - -1.3
1,974,457 + +0.7
1,975,027 - 9192 mRNA_824 0.40 +1.0
1,975,054 + 9192 mRNA_824 0.43 -0.0

Or see this region's nucleotide sequence