Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_834

Experiment: YNB Oleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9201 and 9202 are separated by 314 nucleotides9202 and 9203 are separated by 180 nucleotides mRNA_833: 9201 - HMMPfam-Homeobox domain-PF00046,ProSiteProfiles-'Homeobox' domain profile.-PS50071,SMART-Homeodomain-SM00389,SUPERFAMILY--SSF46689, at 1,996,035 to 1,997,724 9201 mRNA_834: 9202 - HMMPfam-HIT zinc finger-PF04438,ProSiteProfiles-Zinc finger HIT-type profile.-PS51083,SUPERFAMILY--SSF144232, at 1,998,039 to 1,998,977 9202 mRNA_835: 9203 - K16365 SGTA small glutamine-rich tetratricopeptide repeat-containing protein alpha, at 1,999,158 to 2,000,866 9203

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
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1,997,093 - 9201 mRNA_833 0.63 +0.3
1,997,098 + 9201 mRNA_833 0.63 -1.3
1,997,382 + 9201 mRNA_833 0.80 +0.3
1,997,705 - -1.4
1,997,830 + +0.0
1,997,831 - -0.3
1,997,872 + +0.3
1,999,053 - -0.7
1,999,151 - -1.2
1,999,169 - +0.2
1,999,174 - +0.1
1,999,614 + 9203 mRNA_835 0.27 -0.8
1,999,888 - 9203 mRNA_835 0.43 -1.8
1,999,902 + 9203 mRNA_835 0.44 +1.5

Or see this region's nucleotide sequence