Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_856

Experiment: YNB Oleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9223 and 9224 are separated by 172 nucleotides9224 and 9225 are separated by 165 nucleotides mRNA_855: 9223 - BLAST Phosphoribosyltransferase C-terminal [Ceraceosorus bo..., at 2,047,256 to 2,049,795 9223 mRNA_856: 9224 - KOG0828 Predicted E3 ubiquitin ligase, at 2,049,968 to 2,053,108 9224 mRNA_857: 9225 - K14565 NOP58 nucleolar protein 58, at 2,053,274 to 2,055,374 9225

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
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2,048,972 - 9223 mRNA_855 0.68 +0.1
2,049,130 + 9223 mRNA_855 0.74 +0.1
2,049,139 - 9223 mRNA_855 0.74 +0.1
2,049,283 - 9223 mRNA_855 0.80 -1.3
2,049,449 + 9223 mRNA_855 0.86 -0.1
2,049,519 + 9223 mRNA_855 0.89 -0.7
2,049,555 - -1.2
2,049,566 + +0.8
2,049,594 + +0.1
2,049,716 - -0.9
2,049,732 - +0.5
2,049,740 - -3.5
2,049,865 + +1.9
2,049,879 + -0.3
2,050,769 + 9224 mRNA_856 0.26 -2.7
2,052,536 + 9224 mRNA_856 0.82 -0.2
2,052,677 + 9224 mRNA_856 0.86 -0.8
2,052,693 - 9224 mRNA_856 0.87 +0.7
2,053,157 + -0.1

Or see this region's nucleotide sequence