Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_865

Experiment: YNB Oleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9232 and 9233 are separated by 344 nucleotides9233 and 9234 are separated by 265 nucleotides mRNA_864: 9232 - K11253 H3 histone H3, at 2,068,568 to 2,069,276 9232 mRNA_865: 9233 - Hypothetical Protein, at 2,069,621 to 2,070,853 9233 mRNA_866: 9234 - HMMPfam-Cryptococcal mannosyltransferase 1-PF11735, at 2,071,119 to 2,072,862 9234

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
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2,068,965 - 9232 mRNA_864 0.56 -0.1
2,069,331 - +0.0
2,069,343 + -0.1
2,069,345 - -0.0
2,069,505 + -0.3
2,069,509 - +0.4
2,069,749 + 9233 mRNA_865 0.10 -0.6
2,069,917 - 9233 mRNA_865 0.24 +0.9
2,070,197 + 9233 mRNA_865 0.47 -2.1
2,070,335 - 9233 mRNA_865 0.58 -1.4
2,070,439 + 9233 mRNA_865 0.66 +0.3
2,070,569 + 9233 mRNA_865 0.77 +1.3
2,070,570 - 9233 mRNA_865 0.77 +0.3
2,070,841 - +0.1
2,070,990 - -1.2
2,070,999 - +0.7
2,071,033 + -0.2
2,071,446 - 9234 mRNA_866 0.19 +1.8
2,071,685 + 9234 mRNA_866 0.32 +0.4

Or see this region's nucleotide sequence