Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_887

Experiment: YNB Oleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9255 and 9256 are separated by 200 nucleotides mRNA_887: 9255 - K04409 PAK1 p21-activated kinase 1, at 2,120,466 to 2,123,959 9255 mRNA_888: 9256 - KOG1773 Stress responsive protein, at 2,124,160 to 2,125,041 9256

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
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2,119,470 - -0.6
2,119,560 + +1.7
2,119,732 + -0.9
2,119,812 - -0.0
2,119,821 - +0.3
2,119,838 - +0.4
2,119,847 + +0.6
2,119,899 + -0.3
2,119,899 + -0.5
2,119,904 - -0.5
2,119,904 - +0.4
2,119,907 - -0.2
2,119,916 + -2.6
2,119,916 + +0.6
2,119,917 - -0.4
2,119,930 - +0.7
2,119,937 - -0.3
2,120,033 + +1.0
2,120,038 + +0.9
2,120,040 + +0.8
2,120,046 + -0.0
2,120,056 + +1.6
2,120,058 + +0.6
2,120,066 + +1.6
2,120,088 + +0.4
2,120,188 - +0.6
2,120,199 + +0.8
2,120,200 - +1.1
2,120,202 - +0.2
2,120,207 - +0.9
2,120,223 - +0.2
2,120,230 - +0.4
2,120,351 + -1.3
2,120,356 - +0.5
2,120,387 - +0.4
2,120,407 + -0.3
2,120,508 - -0.1
2,120,660 + +1.8
2,120,671 - +1.3
2,120,674 - +1.1
2,121,048 - 9255 mRNA_887 0.17 -0.4
2,121,550 - 9255 mRNA_887 0.31 -2.3
2,121,689 + 9255 mRNA_887 0.35 +1.4
2,121,797 - 9255 mRNA_887 0.38 +0.4
2,121,821 - 9255 mRNA_887 0.39 +1.0
2,121,966 - 9255 mRNA_887 0.43 +1.4
2,122,885 + 9255 mRNA_887 0.69 +1.2
2,122,995 - 9255 mRNA_887 0.72 +0.7
2,123,679 - +0.2
2,123,859 - -0.3
2,123,957 + -0.8
2,124,003 + +0.5
2,124,009 - -0.1
2,124,108 - -0.2
2,124,139 - +0.6
2,124,179 - -0.5
2,124,192 - +0.8
2,124,295 - 9256 mRNA_888 0.15 +1.9
2,124,351 - 9256 mRNA_888 0.22 +0.8
2,124,464 + 9256 mRNA_888 0.34 -0.5
2,124,744 - 9256 mRNA_888 0.66 +0.2
2,124,878 - 9256 mRNA_888 0.81 +0.7

Or see this region's nucleotide sequence