Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_905

Experiment: YNB Oleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9272 and 9273 are separated by 268 nucleotides9273 and 9274 are separated by 85 nucleotides mRNA_904: 9272 - K04705 STAM signal transducing adaptor molecule, at 2,158,067 to 2,161,022 9272 mRNA_905: 9273 - KOG4711 Predicted membrane protein, at 2,161,291 to 2,166,616 9273 mRNA_906: 9274 - K15791 DHKTD1 probable 2-oxoglutarate dehydrogenase E1 component DHKTD1, at 2,166,702 to 2,170,290 9274

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
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2,160,416 - 9272 mRNA_904 0.79 -0.4
2,160,729 + +0.4
2,161,026 - -0.9
2,161,157 - +0.0
2,161,163 + +0.5
2,161,186 + +0.6
2,161,211 - -0.2
2,161,302 - +0.7
2,161,323 - +0.0
2,161,324 + +0.3
2,161,327 - -1.4
2,161,337 - +0.2
2,161,358 - -0.1
2,161,364 + -0.2
2,161,370 + +0.1
2,161,473 - +0.1
2,161,578 + -2.1
2,161,607 - -1.1
2,161,638 + +0.0
2,161,828 - 9273 mRNA_905 0.10 +0.2
2,162,205 + 9273 mRNA_905 0.17 +0.8
2,162,229 - 9273 mRNA_905 0.18 -0.8
2,162,321 + 9273 mRNA_905 0.19 -1.3
2,162,470 - 9273 mRNA_905 0.22 +0.6
2,162,517 - 9273 mRNA_905 0.23 -0.9
2,162,642 - 9273 mRNA_905 0.25 -0.4
2,162,766 - 9273 mRNA_905 0.28 +0.3
2,162,767 + 9273 mRNA_905 0.28 -0.8
2,162,786 + 9273 mRNA_905 0.28 -0.4
2,162,928 - 9273 mRNA_905 0.31 +0.5
2,162,980 - 9273 mRNA_905 0.32 +0.7
2,163,262 + 9273 mRNA_905 0.37 -0.3
2,163,278 + 9273 mRNA_905 0.37 -1.4
2,163,282 + 9273 mRNA_905 0.37 +0.3
2,163,338 - 9273 mRNA_905 0.38 -1.1
2,163,344 - 9273 mRNA_905 0.39 -1.0
2,163,532 + 9273 mRNA_905 0.42 +0.2
2,163,536 - 9273 mRNA_905 0.42 -0.3
2,163,538 - 9273 mRNA_905 0.42 -0.7
2,163,557 - 9273 mRNA_905 0.43 -0.6
2,163,558 + 9273 mRNA_905 0.43 +0.4
2,163,575 + 9273 mRNA_905 0.43 -0.0
2,163,600 + 9273 mRNA_905 0.43 +0.5
2,163,605 + 9273 mRNA_905 0.43 +0.2
2,163,662 + 9273 mRNA_905 0.45 +0.8
2,163,677 - 9273 mRNA_905 0.45 +0.4
2,163,728 + 9273 mRNA_905 0.46 +0.2
2,163,734 - 9273 mRNA_905 0.46 +0.1
2,163,801 + 9273 mRNA_905 0.47 +1.2
2,163,805 - 9273 mRNA_905 0.47 -1.9
2,163,868 - 9273 mRNA_905 0.48 +1.2
2,163,890 + 9273 mRNA_905 0.49 +0.6
2,164,113 - 9273 mRNA_905 0.53 +0.2
2,164,192 + 9273 mRNA_905 0.54 +0.9
2,164,303 + 9273 mRNA_905 0.57 +0.1
2,164,579 - 9273 mRNA_905 0.62 -1.4
2,164,628 - 9273 mRNA_905 0.63 +0.4
2,164,755 + 9273 mRNA_905 0.65 -0.4
2,164,865 - 9273 mRNA_905 0.67 +0.3
2,164,977 + 9273 mRNA_905 0.69 +0.4
2,165,263 - 9273 mRNA_905 0.75 -0.3
2,165,631 + 9273 mRNA_905 0.81 +0.4
2,165,634 - 9273 mRNA_905 0.82 +0.3
2,165,867 - 9273 mRNA_905 0.86 +1.3
2,166,065 - 9273 mRNA_905 0.90 +0.4
2,166,076 - 9273 mRNA_905 0.90 -0.6
2,166,091 - +0.8
2,166,101 + -1.0
2,166,195 - -0.8
2,166,201 + +0.1
2,166,531 - -0.2
2,166,534 + -0.4
2,166,615 + -2.3
2,166,649 - -0.0
2,166,809 + -0.6
2,166,823 + +0.5
2,166,955 - -1.6
2,167,006 + -1.2
2,167,132 - 9274 mRNA_906 0.12 +0.3
2,167,238 - 9274 mRNA_906 0.15 +0.1
2,167,294 + 9274 mRNA_906 0.16 +0.2
2,167,471 - 9274 mRNA_906 0.21 -1.1
2,167,573 - 9274 mRNA_906 0.24 -0.0
2,167,604 + 9274 mRNA_906 0.25 +0.1

Or see this region's nucleotide sequence