Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_910

Experiment: YNB Oleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9277 and 9278 are separated by 525 nucleotides9278 and 9279 are separated by 331 nucleotides mRNA_909: 9277 - KOG0254 Predicted transporter (major facilitator superfamily), at 2,173,901 to 2,176,309 9277 mRNA_910: 9278 - K00794 ribH, RIB4 6,7-dimethyl-8-ribityllumazine synthase, at 2,176,835 to 2,177,637 9278 mRNA_911: 9279 - KOG1773 Stress responsive protein, at 2,177,969 to 2,178,702 9279

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
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2,175,984 + 9277 mRNA_909 0.86 -0.6
2,175,985 - 9277 mRNA_909 0.87 +2.4
2,176,276 + +0.1
2,176,427 - +0.0
2,176,440 + -0.6
2,176,459 - -0.5
2,176,468 - -2.8
2,176,570 - -1.0
2,176,705 - +0.7
2,176,713 - -0.1
2,176,718 - -0.7
2,176,719 + -2.6
2,176,728 + -0.1
2,176,744 + +0.8
2,177,596 - -0.3
2,177,599 - +0.1
2,177,910 - -1.1
2,178,044 + 9279 mRNA_911 0.10 +0.1
2,178,335 - 9279 mRNA_911 0.50 +0.3
2,178,336 - 9279 mRNA_911 0.50 +0.7
2,178,451 - 9279 mRNA_911 0.66 +0.8
2,178,631 - +0.7
2,178,634 + +0.6

Or see this region's nucleotide sequence