Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_916

Experiment: YNB Oleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt mRNA_916: 9284 - HMMPfam-Activator of mitotic machinery Cdc14 phosphatase activation C-term-PF08632, at 2,188,049 to 2,189,443 9284

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
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2,187,154 + +0.0
2,187,188 - +0.1
2,187,582 - +0.2
2,187,650 + +1.0
2,187,701 - -0.4
2,187,793 + +1.2
2,187,814 + +0.7
2,188,092 + -0.2
2,188,093 - +0.7
2,188,186 + -0.2
2,188,198 - 9284 mRNA_916 0.11 -0.5
2,188,218 - 9284 mRNA_916 0.12 +0.9
2,188,627 + 9284 mRNA_916 0.41 +2.0
2,188,774 + 9284 mRNA_916 0.52 +0.1
2,188,792 - 9284 mRNA_916 0.53 +0.6
2,188,794 + 9284 mRNA_916 0.53 +1.3
2,189,071 - 9284 mRNA_916 0.73 +1.7
2,189,105 + 9284 mRNA_916 0.76 +0.4
2,189,409 + +1.0
2,189,513 - +2.2
2,189,931 - +0.9
2,190,225 + +0.0
2,190,386 - +0.4
2,190,410 + -1.9

Or see this region's nucleotide sequence