Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_932

Experiment: YNB Oleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9299 and 9300 are separated by 508 nucleotides mRNA_931: 9299 - K14794 RRP12 ribosomal RNA-processing protein 12, at 1,838 to 6,021 9299 mRNA_932: 9300 - K01803 TPI, tpiA triosephosphate isomerase (TIM), at 6,530 to 8,158 9300

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
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5,792 + +1.2
5,926 + -1.2
6,070 + -1.0
6,215 - -0.4
6,225 - -0.1
6,384 + +0.3
8,258 + -0.3
8,713 + -0.8
8,720 + +0.5
8,730 + +0.1
8,997 - +1.0
9,006 - -0.1

Or see this region's nucleotide sequence