Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_991

Experiment: YNB Oleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9358 and 9359 are separated by 419 nucleotides9359 and 9360 are separated by 378 nucleotides mRNA_990: 9358 - Hypothetical Protein, at 146,849 to 147,409 9358 mRNA_991: 9359 - HMMPfam-Uncharacterised protein family, YAP/Alf4/glomulin-PF08568, at 147,829 to 149,137 9359 mRNA_992: 9360 - HMMPfam-OPT oligopeptide transporter protein-PF03169, at 149,516 to 150,268 9360

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
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146,967 - 9358 mRNA_990 0.21 -0.7
146,967 - 9358 mRNA_990 0.21 -2.2
147,407 - -1.2
148,113 + 9359 mRNA_991 0.22 -2.4
149,163 + -0.4
149,435 + -0.6

Or see this region's nucleotide sequence