Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1054

Experiment: YNB Oleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9421 and 9422 are separated by 112 nucleotides mRNA_1053: 9421 - KOG3856 Uncharacterized conserved protein, at 287,075 to 287,902 9421 mRNA_1054: 9422 - K09419 HSFF heat shock transcription factor, other eukaryote, at 288,015 to 290,756 9422

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
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287,085 + +0.6
287,966 + +0.1
290,843 - -1.6
290,850 + -1.1
290,879 + -2.0
290,883 - -0.6
290,945 - -1.2
290,950 - +0.3
290,967 + -0.3
290,967 + -0.2
290,982 + -0.3
290,985 + +1.0
290,988 - -1.0
291,002 - -0.2
291,083 - -0.4
291,088 - -0.5
291,093 - -0.7
291,102 + -1.1
291,146 - +0.2
291,157 - -0.1
291,158 + +0.1
291,199 + -0.5
291,253 - +0.7
291,269 + -0.0
291,321 - +0.6
291,383 - -1.0
291,415 + +1.2
291,429 + -1.4
291,444 - -0.6
291,448 - -1.0
291,460 + -1.0
291,460 + -0.2
291,462 - -0.1
291,467 + -1.5
291,482 + +2.5
291,500 + -0.0
291,513 + +0.8
291,627 - -2.0
291,633 - +0.1
291,642 + -0.8
291,662 - +0.4
291,664 - -1.1
291,668 + -0.0
291,669 + -0.4
291,681 + -0.5
291,685 + +0.2
291,685 - -1.1
291,739 + -0.2
291,740 + +0.2
291,743 - +0.0
291,747 + +0.7
291,748 - -0.6
291,752 - -0.4

Or see this region's nucleotide sequence