Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1066

Experiment: YNB Oleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9433 and 9434 are separated by 675 nucleotides9434 and 9435 are separated by 845 nucleotides mRNA_1065: 9433 - Hypothetical Protein, at 318,251 to 319,455 9433 mRNA_1066: 9434 - KOG1383 Glutamate decarboxylase/sphingosine phosphate lyase, at 320,131 to 322,252 9434 mRNA_1067: 9435 - K01580 E4.1.1.15, gadB, gadA, GAD glutamate decarboxylase, at 323,098 to 325,825 9435

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
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319,586 + -0.7
319,669 - +0.6
319,690 + +1.0
319,691 + +0.2
319,744 + +0.3
319,766 - +0.1
319,783 + +0.0
319,802 + -0.5
319,836 - +0.9
319,853 - +0.2
319,859 + -0.2
319,866 - -0.1
319,868 - +0.2
319,953 + -0.4
320,120 - -1.1
320,239 - -1.0
320,249 - +0.7
320,273 + -0.1
320,303 + +0.2
320,381 + 9434 mRNA_1066 0.12 -0.1
320,387 + 9434 mRNA_1066 0.12 -0.3
320,445 - 9434 mRNA_1066 0.15 -0.2
320,445 + 9434 mRNA_1066 0.15 -0.3
320,504 + 9434 mRNA_1066 0.18 +0.2
320,508 - 9434 mRNA_1066 0.18 +0.5
320,669 + 9434 mRNA_1066 0.25 +0.0
321,129 + 9434 mRNA_1066 0.47 -0.5
321,162 - 9434 mRNA_1066 0.49 -0.4
321,202 + 9434 mRNA_1066 0.50 -0.5
321,285 - 9434 mRNA_1066 0.54 +0.4
321,292 + 9434 mRNA_1066 0.55 -1.5
321,292 + 9434 mRNA_1066 0.55 -0.2
321,316 + 9434 mRNA_1066 0.56 -0.4
321,434 + 9434 mRNA_1066 0.61 +1.3
321,493 - 9434 mRNA_1066 0.64 -0.8
321,629 - 9434 mRNA_1066 0.71 -2.5
321,656 - 9434 mRNA_1066 0.72 -0.7
321,750 - 9434 mRNA_1066 0.76 -0.5
321,758 - 9434 mRNA_1066 0.77 -0.6
321,936 + 9434 mRNA_1066 0.85 +0.1
322,024 - 9434 mRNA_1066 0.89 -0.1
322,053 - -0.8
322,177 + -1.5
322,239 - -0.4
322,253 + +0.3
322,531 + +0.3
322,591 - +1.6
322,695 - -0.2
322,837 + -1.6
322,961 + +0.5
323,113 + -0.2

Or see this region's nucleotide sequence